The highest authority of the Institute is the Faculty Council, governed by the General Faculty Council Regulations approved by VGTU Senate. Resolutions of the Council are mandatory to all faculty staff and students. The Council is guided in its activities by the Law on Education and Science, the University Statute, and other legislation. 

The Faculty Council:

• Issues Resolutions regulating study organisation, research, financial and internal affairs of the Faculty;
• Solves issues related to study and research activities;
• Terminates the implementation of decisions  of the Dean and other Head’s of Faculty units if they conflict with VGTU Statute or other legislation;
• Proposes to the Rector the candidate for the position of the Dean;
• Approves the Faculty’s Annual report presented by the Dean;
• Approves the Faculty’s budget prepared by the Dean;
• Proposes to the Senate the candidates to receive pedagogical and honorary titles.

Members of Antanas Gustaitis Aviation Institute Council:

• Assoc. Prof.  Eduardas Lasauskas – Chairman of the Council
• Dr. Justas Nugaras - Dean
• Dr. Darius Rudinskas – Vice-Dean
• Dr. Tadas Masiulionis 
• Evaldas Šliažas, student representative